Development and Applicaton of Network Inference Methods

Much of our research work is related to the development and application of algorithms related to the different undertakings for the reverse-engineering of dynamical systems, with an emphasis on discrete dynamical systems. These undertakings include:

(1) Data discretization,

(2) Static Network and Dynamical Model’s Inference,

(3) Validation and Benchmarking of Reverse-engineering Algorithms,

(4) Model Analysis, Control and Simulation


. Benchmarking Time-Series Data Discretization on Inference Methods. Bioinformatics, Jan 18 2019. doi: 10.1093/bioinformatics/btz036. PMID: 30657860, 2019.

Preprint PDF Code Project

. An algebra-based method for inferring gene regulatory networks. BMC Syst Biol. 2014 Mar 26;8:37. PubMed PMID: 24669835 (chosen as Editor’s Picks), 2014.

PDF Code Project AlgoRunContainer